STM32H7 System Clock initialization error

What do you put in RCC_ClkInitStruct->SYSCLKSource ?

Which nucleoH7 ?

On my Nucleo-H743ZI the quartz X3 is not welded. It use the STLINK MCO.

HSE bypass configuration ?

Post your SystemClock_config.

I encounter the exact same problem right now. After I updated STM32CudeIDE to 1.11.0, it crashed in SystemClock_Config at the line where the OP indicated. My processor is STM32H755, and below is my SystemClock_Config setting.

void SystemClock_Config(void)
{
 RCC_OscInitTypeDef RCC_OscInitStruct = {0};
 RCC_ClkInitTypeDef RCC_ClkInitStruct = {0};
 
 /** Supply configuration update enable
 */
 HAL_PWREx_ConfigSupply(PWR_DIRECT_SMPS_SUPPLY);
 
 /** Configure the main internal regulator output voltage
 */
 
 while(!__HAL_PWR_GET_FLAG(PWR_FLAG_VOSRDY)) {}
 
 /** Initializes the RCC Oscillators according to the specified parameters
 * in the RCC_OscInitTypeDef structure.
 */
 RCC_OscInitStruct.OscillatorType = RCC_OSCILLATORTYPE_HSI;
 RCC_OscInitStruct.HSIState = RCC_HSI_DIV1;
 RCC_OscInitStruct.HSICalibrationValue = RCC_HSICALIBRATION_DEFAULT;
 RCC_OscInitStruct.PLL.PLLState = RCC_PLL_ON;
 RCC_OscInitStruct.PLL.PLLSource = RCC_PLLSOURCE_HSI;
 RCC_OscInitStruct.PLL.PLLM = 4;
 RCC_OscInitStruct.PLL.PLLN = 60;
 RCC_OscInitStruct.PLL.PLLP = 2;
 RCC_OscInitStruct.PLL.PLLQ = 2;
 RCC_OscInitStruct.PLL.PLLR = 2;
 RCC_OscInitStruct.PLL.PLLRGE = RCC_PLL1VCIRANGE_3;
 RCC_OscInitStruct.PLL.PLLVCOSEL = RCC_PLL1VCOWIDE;
 RCC_OscInitStruct.PLL.PLLFRACN = 0;
 if (HAL_RCC_OscConfig(&RCC_OscInitStruct) != HAL_OK)
 {
 Error_Handler();
 }
 
 /** Initializes the CPU, AHB and APB buses clocks
 */
 RCC_ClkInitStruct.ClockType = RCC_CLOCKTYPE_HCLK|RCC_CLOCKTYPE_SYSCLK
 |RCC_CLOCKTYPE_PCLK1|RCC_CLOCKTYPE_PCLK2
 |RCC_CLOCKTYPE_D3PCLK1|RCC_CLOCKTYPE_D1PCLK1;
 RCC_ClkInitStruct.SYSCLKSource = RCC_SYSCLKSOURCE_PLLCLK;
 RCC_ClkInitStruct.SYSCLKDivider = RCC_SYSCLK_DIV1;
 RCC_ClkInitStruct.AHBCLKDivider = RCC_HCLK_DIV2;
 RCC_ClkInitStruct.APB3CLKDivider = RCC_APB3_DIV2;
 RCC_ClkInitStruct.APB1CLKDivider = RCC_APB1_DIV2;
 RCC_ClkInitStruct.APB2CLKDivider = RCC_APB2_DIV2;
 RCC_ClkInitStruct.APB4CLKDivider = RCC_APB4_DIV2;
 
 if (HAL_RCC_ClockConfig(&RCC_ClkInitStruct, FLASH_LATENCY_0) != HAL_OK)
 {
 Error_Handler();
 }
}